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First testing version of code

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Alex Selimov 2020-10-12 13:26:58 -04:00
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README.md
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@ -328,6 +328,13 @@ This command will delete all overlapping atoms within a specific cutoff radius `
This option is primarily used when reading data from non .mb formats. This code simply sets the orientation variable for the specified sub box `sbox`.
### Option redef_box
```
-redef_box redef_dim {xlo xhi} {ylo yhi} {zlo zhi}
```
This option allows for the user to redefine box boundaries deleting atoms/elements outside of the new box boundaries. Elements are refined to atmoistics if they intersect the newly defined box boundaries.
The arguments are described below:
`redef_dim` - The dimensions to be redefined. Can be any permutation of `x`, `y`, `z`, `xy`, `yz`, `xz`, `xyz`. The order of the dimensions dictates the order that the new dimensions must be defined
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## Position Specification