Initial commit with file writing and create mode working for atoms

src/Makefile

@@ -1,18 +1,34 @@
-CC=ifort
 FC=ifort
-FFLAGS=-c -mcmodel=large -debug -O0 -stand f08 -fpe0 -traceback -check bounds,uninit -warn all -implicitnone
-
-OBJECTS= main.o elements.o lattice.o subroutines.o precision_comm_module.o
+#FFLAGS=-c -mcmodel=large -debug -O0 -stand f08 -fpe0 -traceback -check bounds,uninit -warn all -implicitnone
+FFLAGS=-c -mcmodel=large -Ofast
+MODES=mode_create.o
+OBJECTS=main.o elements.o io.o subroutines.o functions.o atoms.o call_mode.o build_subroutines.o $(MODES)
 
 .SUFFIXES:
 .SUFFIXES: .c .f .f90 .F90 .o
 
-builder: $(OBJECTS) 
+cacmb: $(OBJECTS) 
 	$(FC) $(OBJECTS) -o $@
 
 .f90.o: 
 	$(FC) $(FFLAGS) $< 
 
-main.o lattice.o elements.o region.o subroutines.o : precision_comm_module.o
-lattice.o : subroutines.o
-main.o : elements.o lattice.o region.o
+.PHONY: clean
+clean: 
+	$(RM) cacmb  *.o 
+
+testfuncs: testfuncs.o functions.o subroutines.o
+	$(FC) testfuncs.o functions.o build_subroutines.o subroutines.o elements.o -o $@
+
+.PHONY: cleantest
+cleantest:
+	$(RM) testfuncs testfuncs.o
+
+$(OBJECTS) : parameters.o
+atoms.o subroutines.o testfuncs.o : functions.o
+main.o io.o build_subroutines.o: elements.o 
+call_mode.o : $(MODES)
+$(MODES) io.o: atoms.o 
+$(MODES) main.o : io.o
+testfuncs.o elements.o mode_create.o: subroutines.o
+testfuncs.o : build_subroutines.o